import re
text = r"\( Na Cl_{2} \) and \( Fe k_{3} cl \)"
print( re.sub(r'\\\(\s*([^()]*?)\s*\\\)', lambda x: f'\\( {"".join(c if c.isalnum() else "" for c in x.group(1))} \\)', text) )
aW1wb3J0IHJlCnRleHQgPSByIlwoIE5hIENsX3syfSBcKSBhbmQgXCggRmUga197M30gY2wgIFwpIgpwcmludCggcmUuc3ViKHInXFxcKFxzKihbXigpXSo/KVxzKlxcXCknLCBsYW1iZGEgeDogZidcXCggeyIiLmpvaW4oYyBpZiBjLmlzYWxudW0oKSBlbHNlICIiIGZvciBjIGluIHguZ3JvdXAoMSkpfSBcXCknLCB0ZXh0KSAp