fork download
copy 
  1. #!/bin/bash
  2. s="@SQ SN:NbV1Ch16     LN:148804966
  3. @SQ SN:NbV1Ch17     LN:145611047
  4. @SQ SN:NbV1Ch18     LN:144482707
  5. @SQ SN:NbV1Ch19     LN:137831541
  6. @RG ID:OZBenth8_.fastp.fq.gz        SM:OZBenth8_.fastp.fq.gz        LB:OZBenth8_.fastp.fq.gz        PL:ILLUMINA
  7. @PG ID:bwa  PN:bwa  VN:0.7.17-r1188 CL:bwa mem OZBenth8_R1.fastp.fq.gz 
  8. HWI-ST945_0069:8:1101:1475:2032#NNNNNN      99      NbV1Ch07        110148523       60      100M    =       110148853       430     CCAAAAAGCACAGCTGGACCAAACCGGCCCAAATATTGATAGCCGTCAGACTACGCCATGAGCGGAGTCCCCCAAGTTCGTTTGATAGAAAATTCAGGAC
  9.     CCCFFFFFHHHHHJJJJJJJJJJJHJJJJJJJJJJJJJIJJJIIJJJJJJJJHHHFFFDECEEDDDDDDDDDDDDACDEDDDDDDDEDDDDDDDDDDDDD    NM:i:0  MD:Z:100        MC:Z:100M       AS:i:100        XS:i:68 RG:Z:OZBenth8_.fastp.fq.gz
  10. HWI-ST945_0069:8:1101:1475:2032#NNNNNN      147     NbV1Ch07        110148853       60      100M    =       110148523       -430    AATCTTCTTCCAATTCCATGGCGGCCCAAAGTCACACGGCCTCTTCACTTTCTGAGGTTGCAAGAAGAACCACACAAAAAATATTGGGGGCTAAAATCCC
  11.     DDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEC=FFFHHHJJJJJJJIJHGIJJIBJJJIIJJJIJJJJJFIHJHJJJJJJJJJJJJJHHHHHFFFFFCCC    NM:i:1  MD:Z:54T45      MC:Z:100M       AS:i:95 XS:i:65 RG:Z:OZBenth8_.fastp.fq.gz
  12. HWI-ST945_0069:8:1101:1446:2101#NNNNNN      83      NbV1Ch16        133875416       44      100M    =       133874965       -551    ATATGTCTTATTCTTCTTCGACGAGTTTCAATCTAAAATTCAGTCAAAACCAAGTCTAATCTTCACCAAAACCCCTCAAAATTGAGATATAAACTCCTAA
  13.     DDDDDD"
  14. sed 's/^[^@]/LP1-&/' <<< "$s"
Success #stdin #stdout 0s 19648KB
comments (?)
stdin
copy 
Standard input is empty
stdout
copy 
@SQ SN:NbV1Ch16     LN:148804966
@SQ SN:NbV1Ch17     LN:145611047
@SQ SN:NbV1Ch18     LN:144482707
@SQ SN:NbV1Ch19     LN:137831541
@RG ID:OZBenth8_.fastp.fq.gz        SM:OZBenth8_.fastp.fq.gz        LB:OZBenth8_.fastp.fq.gz        PL:ILLUMINA
@PG ID:bwa  PN:bwa  VN:0.7.17-r1188 CL:bwa mem OZBenth8_R1.fastp.fq.gz 
LP1-HWI-ST945_0069:8:1101:1475:2032#NNNNNN      99      NbV1Ch07        110148523       60      100M    =       110148853       430     CCAAAAAGCACAGCTGGACCAAACCGGCCCAAATATTGATAGCCGTCAGACTACGCCATGAGCGGAGTCCCCCAAGTTCGTTTGATAGAAAATTCAGGAC
LP1-    CCCFFFFFHHHHHJJJJJJJJJJJHJJJJJJJJJJJJJIJJJIIJJJJJJJJHHHFFFDECEEDDDDDDDDDDDDACDEDDDDDDDEDDDDDDDDDDDDD    NM:i:0  MD:Z:100        MC:Z:100M       AS:i:100        XS:i:68 RG:Z:OZBenth8_.fastp.fq.gz
LP1-HWI-ST945_0069:8:1101:1475:2032#NNNNNN      147     NbV1Ch07        110148853       60      100M    =       110148523       -430    AATCTTCTTCCAATTCCATGGCGGCCCAAAGTCACACGGCCTCTTCACTTTCTGAGGTTGCAAGAAGAACCACACAAAAAATATTGGGGGCTAAAATCCC
LP1-    DDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEC=FFFHHHJJJJJJJIJHGIJJIBJJJIIJJJIJJJJJFIHJHJJJJJJJJJJJJJHHHHHFFFFFCCC    NM:i:1  MD:Z:54T45      MC:Z:100M       AS:i:95 XS:i:65 RG:Z:OZBenth8_.fastp.fq.gz
LP1-HWI-ST945_0069:8:1101:1446:2101#NNNNNN      83      NbV1Ch16        133875416       44      100M    =       133874965       -551    ATATGTCTTATTCTTCTTCGACGAGTTTCAATCTAAAATTCAGTCAAAACCAAGTCTAATCTTCACCAAAACCCCTCAAAATTGAGATATAAACTCCTAA
LP1-    DDDDDD
https://ideone.com/Gl6Nmi
language:
Bash (bash 5.0.3)
created:
5 years ago
visibility:
secret

Share or Embed source code

Discover > Sphere Engine API

The brand new service which powers Ideone!

Discover > IDE Widget

Widget for compiling and running the source code in a web browser!