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  1. import re
  2. p = re.compile(r'^Sequence:[^|]*\|(?P<hitsid>[^|]*)\|\S*\s*(?P<protein>[^][]*?)\s*\[(?P<organism>[^][]*)][\s\S]*?\nE-value:\s*(?P<evalue>.*)', re.MULTILINE)
  3. s = "****ALIGNMENT****\nSequence:  gi|86755972|gb|ABD15130.1| cold acclimation protein COR413-PM1 [Chimonanthus praecox]\nLength:  201\nE-value:  2.66576e-82\nKYLAMKTDQLAVANMIDSDINELKMATMRLINDASMLGHYGFGTHFLKWLACLAAIYLLILDRTNWRTNMLTSLL...\n+YLAMKTD+ +   +I +D+ E+  A  +L+ DA+ LG  G GT  LKW+A  AAIYLLILDRTNW+TNMLT+LL...\nEYLAMKTDEWSAQQLIQTDLKEMGKAAKKLVYDATKLGSLGVGTSILKWVASFAAIYLLILDRTNWKTNMLTALL..."
  4. res = [m.groupdict() for m in p.finditer(s)]
  5. for x in res:
  6. 	print(x['hitsid'])
  7. 	print(x['protein'])
  8. 	print(x['organism'])
  9. 	print(x['evalue'])
Success #stdin #stdout 0.01s 9016KB
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86755972
cold acclimation protein COR413-PM1
Chimonanthus praecox
2.66576e-82
https://ideone.com/PhGsbK
language:
Python (cpython 2.7.16)
created:
9 years ago
visibility:
public

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