fork(1) download
  1. /* package whatever; // don't place package name! */
  2.  
  3. import java.util.*;
  4. import java.lang.*;
  5. import java.io.*;
  6. import java.util.regex.Matcher;
  7. import java.util.regex.Pattern;
  8.  
  9. /* Name of the class has to be "Main" only if the class is public. */
  10. class Ideone
  11. {
  12. public static void main (String[] args) throws java.lang.Exception{
  13. findDimers("AATTAAAATTTTAAAAAAAAGGGCCCTTTAAATATATATATATATAAGGGATTTAAGGAATTAAGATGATGATGATGATGATGGTAG");
  14. }
  15. private static void findDimers(String s){
  16.  
  17. Pattern pattern = Pattern.compile("(?:([ATGC])(?!\\1)([ATGC])\\1\\2)+");
  18. Matcher matcher = pattern.matcher(s);
  19.  
  20. while (matcher.find()) {
  21. System.out.print("Start index: " + matcher.start());
  22. System.out.print(" End index: " + matcher.end());
  23. System.out.println(" Found: " + matcher.group());
  24. }
  25.  
  26. }
  27. }
Success #stdin #stdout 0.07s 380224KB
stdin
Standard input is empty
stdout
Start index: 31 End index: 43 Found: ATATATATATAT